(oaftype exact result) and (resulttypeid exact software) en_US 10 1 976955

__bioTools__::00e2c835d3ae2a8c80ecdbb68a721927 2026-08-19T08:12:20.668185463 2025-02-20T09:30:22.314Z

50|__bioTools__::00e2c835d3ae2a8c80ecdbb68a721927 findpromoter Team, Galaxy Support 2016-12-19 Program to search for a promoter motif and optionally, an adapter sequence from a source species on a target species. 0206 medical engineering Transcription factors and regulatory sites Sequence analysis 02 engineering and technology bio.tools https://galaxy.pasteur.fr/root?tool_id=toolshed.pasteur.fr%2Frepos%2Ffmareuil%2Fpromoteur_tools%2Ffindpromoter%2F1.0 false false 0.9 2016-12-19 https://bio.tools/findpromoter

__bioTools__::00ed53a666055a791bd5935e37e933ce 2026-08-19T08:12:03.190602368 2025-02-20T09:30:22.34Z

bottled_saft 50|__bioTools__::00ed53a666055a791bd5935e37e933ce Müller, E. A. 2018-05-29 SAFT-γ Mie Force Field Parameters for Thousands of Molecular Fluids. Chemistry Small molecules Molecular modelling bio.tools Python http://www.bottledsaft.org/about false false 0.9 2018-05-29 https://bio.tools/bottled_saft

__bioTools__::00fb81b0f860441c7d1a07f4031f7337 2026-08-19T08:12:20.317035190 2025-02-20T09:30:22.359Z

muscle-fascicle-tracking-ultrasound 50|__bioTools__::00fb81b0f860441c7d1a07f4031f7337 Lichtwark, Glen 2021-05-05 Implementation of an optical flow algorithm to track muscle length changes imaged with ultrasound. 0303 health sciences 03 medical and health sciences Biomedical science Echography Biology bio.tools MATLAB false false 0.9 2021-05-05 https://bio.tools/muscle-fascicle-tracking-ultrasound

__bioTools__::00ffd886688cde6a7a5bfd458a34d036 2026-08-19T08:12:18.596198492 2025-02-20T09:30:22.364Z

methylextract 50|__bioTools__::00ffd886688cde6a7a5bfd458a34d036 Hackenberg, Michael Oliver, José L. Barturen, Guillermo Lebrón, Ricardo 2017-08-03 User friendly tool to generate i) high quality, whole genome methylation maps and ii) to detect sequence variation within the same sample preparation. Sequencing Epigenetics DNA bio.tools http://bioinfo2.ugr.es/MethylExtract/downloads/ManualMethylExtract.pdf false false 0.9 2017-08-03 https://bio.tools/methylextract

__bioTools__::019813a398da665764643d79868e4bd3 2026-08-19T08:12:00.087691264 2025-02-20T09:30:22.484Z

pydockweb 50|__bioTools__::019813a398da665764643d79868e4bd3 Jiménez-Garcí­a, Brian Lumbreras, Luis Ángel Rodriguez 2016-10-11 Web server for the structural prediction of protein-protein interactions. Given the 3D coordinates of two interacting proteins, it returns the best rigid-body docking orientations generated by FTDock (Gabb HA. et al. J Mol Biol 1997;272:106-120) and evaluated by pyDock scoring function (Cheng et al. 2007 Proteins 68, 503-515), which includes electrostatics, desolvation energy and limited van der Waals contribution. Computational chemistry 0206 medical engineering 02 engineering and technology bio.tools https://life.bsc.es/pid/pydockweb/info/faq_and_help false false 0.9 doi_dedup___::b6807cfef2c2e17990326dd8645cf7b6 https://dx.doi.org/10.1093/bioinformatics/btt262 https://dx.doi.org/10.1093/bioinformatics/btt262 2013-12-17 https://pubmed.ncbi.nlm.nih.gov/23661696 https://pubmed.ncbi.nlm.nih.gov/23661696 2013-01-01 https://dblp.org/rec/journals/bioinformatics/Jimenez-GarciaPF13.html https://doi.org/10.1093/bioinformatics/btt262 https://dblp.org/rec/journals/bioinformatics/Jimenez-GarciaPF13.html https://doi.org/10.1093/bioinformatics/btt262 23661696 Juan Fernández-Recio Brian Jiménez-García Carles Pons https://academic.oup.com/bioinformatics/article-pdf/29/13/1698/18536412/btt262.pdf https://academic.oup.com/bioinformatics/article-pdf/29/13/1698/18536412/btt262.pdf <jats:title>Abstract</jats:title> <jats:p>Summary: pyDockWEB is a web server for the rigid-body docking prediction of protein–protein complex structures using a new version of the pyDock scoring algorithm. We use here a new custom parallel FTDock implementation, with adjusted grid size for optimal FFT calculations, and a new version of pyDock, which dramatically speeds up calculations while keeping the same predictive accuracy. Given the 3D coordinates of two interacting proteins, Oxford University Press (OUP) 2013-05-09 10.1093/bioinformatics/btt262 2013-05-09 https://doi.org/10.1093/bioinformatics/btt262 https://doi.org/10.1093/bioinformatics/btt262 doi_dedup___::b6807cfef2c2e17990326dd8645cf7b6 https://dx.doi.org/10.1093/bioinformatics/btt262 https://dx.doi.org/10.1093/bioinformatics/btt262 2013-12-17 https://pubmed.ncbi.nlm.nih.gov/23661696 https://pubmed.ncbi.nlm.nih.gov/23661696 2013-01-01 https://dblp.org/rec/journals/bioinformatics/Jimenez-GarciaPF13.html https://doi.org/10.1093/bioinformatics/btt262 https://dblp.org/rec/journals/bioinformatics/Jimenez-GarciaPF13.html https://doi.org/10.1093/bioinformatics/btt262 23661696 Juan Fernández-Recio Brian Jiménez-García Carles Pons https://academic.oup.com/bioinformatics/article-pdf/29/13/1698/18536412/btt262.pdf https://academic.oup.com/bioinformatics/article-pdf/29/13/1698/18536412/btt262.pdf <jats:title>Abstract</jats:title> <jats:p>Summary: pyDockWEB is a web server for the rigid-body docking prediction of protein–protein complex structures using a new version of the pyDock scoring algorithm. We use here a new custom parallel FTDock implementation, with adjusted grid size for optimal FFT calculations, and a new version of pyDock, which dramatically speeds up calculations while keeping the same predictive accuracy. Given the 3D coordinates of two interacting proteins, Oxford University Press (OUP) 2013-05-09 10.1093/bioinformatics/btt262 2013-05-09 https://doi.org/10.1093/bioinformatics/btt262 https://doi.org/10.1093/bioinformatics/btt262 2016-10-11 https://bio.tools/pydockweb

__bioTools__::01e2ad9cf8e994fbb093a3fc44c9c37f 2026-08-19T08:12:16.450368086 2025-02-20T09:30:22.553Z

50|__bioTools__::01e2ad9cf8e994fbb093a3fc44c9c37f aneurysm-detection Mitra, Jubin 2021-05-05 Detection of Cerebral Aneurysm using Modified Hough Circle Transform 0303 health sciences 03 medical and health sciences RNA immunoprecipitation Nutritional science Imaging bio.tools MATLAB false false 0.9 doi_dedup___::35183b0ea0664bc4451dc4ace74ed289 Chandra, Abhijit Mitra, Jubin CC BY NC ND http://elcvia.cvc.uab.es/article/download/v12-n1-mitra-chandra-halder/pdf http://elcvia.cvc.uab.es/article/download/v12-n1-mitra-chandra-halder/pdf 2013-07-16 CC BY NC ND https://doi.org/10.5565/rev/elcvia.529 https://doi.org/10.5565/rev/elcvia.529 https://dx.doi.org/10.5565/rev/elcvia.529 https://dx.doi.org/10.5565/rev/elcvia.529 CC BY NC ND https://ddd.uab.cat/record/112030 https://dx.doi.org/urn:doi:10.5565/rev/elcvia.529 https://ddd.uab.cat/record/112030 https://dx.doi.org/urn:doi:10.5565/rev/elcvia.529 10.5565/rev/elcvia.529 <jats:p>The Circle of Willis is the junction of two carotid arteries and two vertebral arteries that supply the brain with nutrition. Junctions where these arteries come together may develop weak spots that can balloon out and fill with blood, creating  aneurysms. These sac-like areas may leak or rupture, spilling blood into surrounding tissues which may cause artery spasm leading to potential stroke or even death. Clipping and coiling are two treatment options preferred by neurosurgeon which re 2013-01-01 CC BY NC ND https://ddd.uab.cat/record/112030 https://ddd.uab.cat/record/112030 Halder, Tanmay Universitat Autonoma de Barcelona 2013-07-16 2013-07-01 https://doaj.org/article/d16408b109cf4db98310a1e630ee9bc9 https://doaj.org/article/d16408b109cf4db98310a1e630ee9bc9 2013-01-01 http://www.raco.cat/index.php/ELCVIA/article/download/280903/368567 http://www.raco.cat/index.php/ELCVIA/article/view/280903 http://www.raco.cat/index.php/ELCVIA/article/view/280903 2021-05-05 https://bio.tools/aneurysm-detection

__bioTools__::0250936b9827600453c6116d9d97544c 2026-08-19T08:12:19.863442129 2025-02-20T09:30:22.641Z

star-genome-browser 50|__bioTools__::0250936b9827600453c6116d9d97544c Wang, Wei 2018-05-21 An integrated solution to management and visualization of sequencing data. 0206 medical engineering Sequencing 02 engineering and technology Data management Data visualisation bio.tools PHP C++ Perl https://github.com/angell1117/STAR-genome-browser false false 0.9 2018-05-21 GPL-2.0 https://bio.tools/star-genome-browser

__bioTools__::03dd9f5ed793a3e1fa14d3bbd71b8cdd 2026-08-19T08:12:15.696051398 2025-02-20T09:30:23.015Z

scr_find 50|__bioTools__::03dd9f5ed793a3e1fa14d3bbd71b8cdd Paiardini, Alessandro 2017-03-24 SCR_FIND is a tool to analyze structurally conserved regions (SCRs) from superimposed structures and multiple sequence alignments. Protein structural motifs and surfaces Structure prediction 0206 medical engineering Protein folds and structural domains 02 engineering and technology Structure analysis Gene and protein families bio.tools Python http://schubert.bio.uniroma1.it/pymod/documentation.html false false 0.9 2017-03-24 https://bio.tools/scr_find

__bioTools__::0427a93567c80a8bb0135ea6c9007526 2026-08-19T08:12:07.414738495 2025-02-20T09:30:23.063Z

omixon_variant_toolkit 50|__bioTools__::0427a93567c80a8bb0135ea6c9007526 form, Contact 2017-01-13 These tools are designed to help clinical, diagnostic and research labs to efficiently get the maximum accuracy and precision from their targeted NGS data. Mapping Comparative genomics 0206 medical engineering Sequence analysis 02 engineering and technology bio.tools https://www.omixon.com/support-and-resources/ false false 0.9 2017-01-13 https://bio.tools/omixon_variant_toolkit

__bioTools__::0431497b4e60234d6600ba5d9334c31d 2026-08-19T08:12:18.637085015 2025-02-20T09:30:23.071Z

mimodb 50|__bioTools__::0431497b4e60234d6600ba5d9334c31d Form, Contact 2017-03-30 A mimotope database. The MimoDB database also provides tools for simple and advanced searches, structure visualization, BLAST and alignment view on the fly. Small molecules Gene transcripts Protein interaction experiment Structure analysis bio.tools http://immunet.cn/bdb/index.php/help/index false false 0.9 2017-03-30 https://bio.tools/mimodb