Uncharacterized protein

(oaftype exact result) and (resulttypeid exact dataset) en_US 10 1 92817388

uniprot_____::318a4318f09a73fbd73994c0204ce93e 2025-12-20T12:56:16.188729800

a0a0v0q7x3 a0a0v0q7x3 Uncharacterized protein 2017-04-20 false false 0.9 null doi_dedup___::06d81a926d9df22bae0ead38aa9fd544 Genome of the facultative scuticociliatosis pathogen Pseudocohnilembus persalinus provides insight into its virulence through horizontal gene transfer Cheng, J CC BY https://www.nature.com/articles/srep15470.pdf https://www.nature.com/articles/srep15470.pdf Tian, M 10.1038/srep15470 2015-10-21 CC BY http://dx.doi.org/10.1038/srep15470 http://dx.doi.org/10.1038/srep15470 2017-09-29 CC BY http://hdl.handle.net/10141/622269 http://hdl.handle.net/10141/622269 PMC4614350 Warren, A Springer Science and Business Media LLC Jiang, C 26486372 Yuan, D https://dx.doi.org/10.1038/srep15470 https://dx.doi.org/10.1038/srep15470 10141/622269 Miao, W Wang, G AbstractCertain ciliates of the subclass Scuticociliatia (scuticociliates) are facultative parasites of fishes in which they cause a suite of diseases collectively termed scuticociliatosis. Hitherto, comparatively little was known about genetics and genomics of scuticociliates or the mechanism of scuticociliatosis. In this study, a laboratory culture of the facultatively pathogenic scuticociliatePseudocohnilembus persalinuswas establish Pan, X 2016-09-14 https://pubmed.ncbi.nlm.nih.gov/26486372 https://pubmed.ncbi.nlm.nih.gov/26486372 2015-10-21 Xiong, J 2015-10-21 http://dx.doi.org/10.1038/srep15470 http://dx.doi.org/10.1038/srep15470 2015-10-21 CC BY https://doi.org/10.1038/srep15470 https://doi.org/10.1038/srep15470 2017-04-20 a0a0v0q7x3 CC 0 http://www.uniprot.org/uniprot/A0A0V0Q7X3

uniprot_____::34ef1233d79d1409d8d2b5f74be3c326 2025-12-20T12:56:40.252179140

a0a154qxa6 a0a154qxa6 Sporulation protein 2017-04-20 false false 0.9 null doi_dedup___::964f51a4ae633fa405ac9c8e4dd5365e Zhili He 10.1128/mbio.02234-15 Lavanya Rishishwar 2016-05-04 CC BY NC SA https://doi.org/10.1128/mbio.02234-15 https://doi.org/10.1128/mbio.02234-15 https://dx.doi.org/10.1128/mbio.02234-15 https://dx.doi.org/10.1128/mbio.02234-15 Adam M. Deutschbauer Romy Chakraborty Jizhong Zhou CC BY NC SA https://mbio.asm.org/content/mbio/7/2/e02234-15.full.pdf https://mbio.asm.org/content/mbio/7/2/e02234-15.full.pdf ABSTRACT Unraveling the drivers controlling the response and adaptation of biological communities to environmental change, especially anthropogenic activities, is a central but poorly understood issue in ecology and evolution. Comparative genomics studies suggest that lateral gene transfer (LGT) is a major force driving microbial genome evolution, but its role in the evolution of microbial communities remains elusive. To delineate the impor Stefan J. Green Om Prakash 27048805 2017-01-10 https://pubmed.ncbi.nlm.nih.gov/27048805 https://pubmed.ncbi.nlm.nih.gov/27048805 Christopher L. Hemme Joy D. Van Nostrand 2016-05-01 https://doaj.org/article/8bc621fa28b94b9da64d8bdb88599419 https://doaj.org/article/8bc621fa28b94b9da64d8bdb88599419 2016-04-05 CC BY NC SA http://dx.doi.org/10.1128/mBio.02234-15 http://dx.doi.org/10.1128/mBio.02234-15 Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community 2016-05-04 I. King Jordan PMC4817265 Angelica Pettenato Terry C. Hazen Adam P. Arkin 2016-05-04 https://escholarship.org/uc/item/9m1930b9 https://doi.org/https://doi.org/10.1128/mbio.02234-15 https://doi.org/https://doi.org/10.1128/mbio.02234-15 2016-01-01 CC BY NC SA https://digitalcommons.uri.edu/bps_facpubs/84 https://doi.org/https://doi.org/10.1128/mBio.02234-15 https://doi.org/https://doi.org/10.1128/mBio.02234-15 Joel E. Kostka 2016-05-04 https://escholarship.org/uc/item/9m1930b9 https://escholarship.org/content/qt9m1930b9/qt9m1930b9.pdf https://escholarship.org/uc/item/9m1930b9 https://escholarship.org/content/qt9m1930b9/qt9m1930b9.pdf American Society for Microbiology Liyou Wu 2017-04-20 a0a154qxa6 CC 0 http://www.uniprot.org/uniprot/A0A154QXA6

uniprot_____::3a1e79621f729f3eabe38f99de840569 2025-12-20T12:56:48.745679645

a0a0a7i3c9 a0a0a7i3c9 Uncharacterized protein 2017-04-20 false false 0.9 null doi_dedup___::a744d84e40d35220afe0b93a47b35a8f Chassard, Christophe ABSTRACT The complete genome sequence of Bifidobacterium kashiwanohense strain PV20-2, an infant feces isolate, was determined using single-molecule real-time sequencing (SMRT). Hierarchical genome assembly resulted in a completely assembled genome of 2,370,978 bp. The B. kashiwanohense PV20-2 genome is the first completely sequenced and assembled Complete and Assembled Genome Sequence of Bifidobacterium kashiwanohense PV20-2, Isolated from the Feces of an Anemic Kenyan Infant Klumpp, Jochen 25614572 https://doi.org/10.1128/genomea.01467-14 https://doi.org/10.1128/genomea.01467-14 2015-01-01 CC BY http://hdl.handle.net/20.500.11850/103030 http://hdl.handle.net/20.500.11850/103030 2015-02-26 2015-01-23 https://pubmed.ncbi.nlm.nih.gov/25614572 https://pubmed.ncbi.nlm.nih.gov/25614572 2015-01-01 CC BY https://dx.doi.org/10.3929/ethz-b-000103030 https://dx.doi.org/10.3929/ethz-b-000103030 Vazquez-Gutierrez, Pamela Jans, Christoph PMC4319591 Stevens, Marc 2015-01-01 https://hal.science/hal-04673929v1 https://doi.org/10.1128/genomea.01467-14 https://hal.science/hal-04673929v1 https://doi.org/10.1128/genomea.01467-14 https://dx.doi.org/10.1128/genomea.01467-14 https://dx.doi.org/10.1128/genomea.01467-14 10.3929/ethz-b-000103030 Lacroix, Christophe 2015-02-26 CC BY https://doi.org/10.1128/genomea.01467-14 https://doi.org/10.1128/genomea.01467-14 2015-02-26 https://doi.org/https://doi.org/10.1128/genomeA.01467-14 https://doi.org/https://doi.org/10.1128/genomeA.01467-14 10.1128/genomea.01467-14 American Society for Microbiology 2015-01-22 CC BY http://dx.doi.org/10.1128/genomeA.01467-14 http://dx.doi.org/10.1128/genomeA.01467-14 20.500.11850/103030 2017-04-20 a0a0a7i3c9 CC 0 http://www.uniprot.org/uniprot/A0A0A7I3C9

uniprot_____::3a40b932387cea5633a78fc278a998e8 2025-12-20T12:56:49.188283191

j2g098 j2g098 Uncharacterized protein 2017-04-20 false false 0.9 null doi_dedup___::0aca9dbfa7fc1852dd7c0e182bb5ace4 Stanton L, Martin 2012-11-01 ASM Journals Non-Commercial TDM https://doi.org/10.1128/jb.01243-12 https://doi.org/10.1128/jb.01243-12 Tse-Yuan S, Lu PMC3486089 23045501 10.1128/jb.01243-12 Christopher W, Schadt Courtney M, Johnson 2012-11-01 Steven D, Brown https://dx.doi.org/10.1128/jb.01243-12 https://dx.doi.org/10.1128/jb.01243-12 Sagar M, Utturkar ABSTRACT To aid in the investigation of the Populus deltoides microbiome, we generated draft genome sequences for 21 Pseudomonas s Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides Mitchel J, Doktycz Miriam L, Land https://jb.asm.org/content/jb/194/21/5991.full.pdf https://jb.asm.org/content/jb/194/21/5991.full.pdf 2013-01-04 https://pubmed.ncbi.nlm.nih.gov/23045501 https://pubmed.ncbi.nlm.nih.gov/23045501 Dawn M, Klingeman Dale A, Pelletier American Society for Microbiology 2017-04-20 j2g098 CC 0 http://www.uniprot.org/uniprot/J2G098

uniprot_____::53b9d699258caebfed96ced683b7b7f4 2025-12-20T12:56:14.958025714

a0a1w9p787 a0a1w9p787 Triosephosphate isomerase 2017-11-30 false false 0.9 null doi_dedup___::c6187208f8b6feb73a4e2a2b2336b0b7 Dombrowski, Nina 2017-08-23 http://dx.doi.org/10.1186/s40168-017-0322-2 http://dx.doi.org/10.1186/s40168-017-0322-2 CC BY https://microbiomejournal.biomedcentral.com/track/pdf/10.1186/s40168-017-0322-2 https://microbiomejournal.biomedcentral.com/track/pdf/10.1186/s40168-017-0322-2 2018-05-01 https://pubmed.ncbi.nlm.nih.gov/28835260 https://pubmed.ncbi.nlm.nih.gov/28835260 28835260 2017-08-23 https://dx.doi.org/10.1186/s40168-017-0322-2 https://dx.doi.org/10.1186/s40168-017-0322-2 Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments Springer Science and Business Media LLC 10.1186/s40168-017-0322-2 Deep-sea hydrothermal vents are hotspots for productivity and biodiversity. Thermal pyrolysis and circulation produce fluids rich in hydrocarbons and reduced compounds that stimulate microbial activity in surrounding sediments. Several studies have characterized the diversity of Guaymas Basin (Gulf of California) sediment-inhabiting microorganisms; however, many of the identified taxa lack cultures or genomic representations. Here, we resolved the metabolic potential and community-level interact Teske, Andreas P. PMC5569505 Baker, Brett J. 2017-08-23 CC BY https://doi.org/10.1186/s40168-017-0322-2 https://doi.org/10.1186/s40168-017-0322-2 Seitz, Kiley W. 2017-11-30 a0a1w9p787 CC 0 http://www.uniprot.org/uniprot/A0A1W9P787

uniprot_____::5416c4cf1f06dec3ff9777d033746fb5 2025-12-20T12:56:49.300650322

a0a220jd23 a0a220jd23 Cytochrome c oxidase subunit 1 2017-10-26 false false 0.9 null doi_dedup___::33a1a6e3c1209bc78393f062825d3bb8 Reza Zahiri 2017-06-01 J. Donald Lafontaine 2017-01-01 https://doaj.org/article/bc59e6f7301541bfb58b9a4f3ef918fa https://doaj.org/article/bc59e6f7301541bfb58b9a4f3ef918fa B. Christian Schmidt Public Library of Science (PLoS) This study reports the assembly of a DNA barcode reference library for species in the lepidopteran superfamily Noctuoidea from Canada and the USA. Based on the analysis of 69,378 specimens, the library provides coverage for 97.3% of the noctuoid fauna (3565 of 3664 species). In addition to verifying the strong performance of DNA barcodes in the discrimination of these species, the results indicate close congruence between the number of species analyzed (3565) and the number of sequence clusters 10.1371/journal.pone.0178548 2017-06-01 CC BY http://dx.doi.org/10.1371/journal.pone.0178548 http://dx.doi.org/10.1371/journal.pone.0178548 28570635 2017-06-01 CC BY https://doi.org/10.1371/journal.pone.0178548 https://doi.org/10.1371/journal.pone.0178548 CC BY https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0178548&type=printable https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0178548&type=printable https://dx.doi.org/10.1371/journal.pone.0178548 https://dx.doi.org/10.1371/journal.pone.0178548 Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America Jeremy R. deWaard 2017-09-26 https://pubmed.ncbi.nlm.nih.gov/28570635 https://pubmed.ncbi.nlm.nih.gov/28570635 Evgeny V. Zakharov PMC5453547 Paul D. N. Hebert 2017-10-26 a0a220jd23 CC 0 http://www.uniprot.org/uniprot/A0A220JD23

uniprot_____::570b503eecd50ba2ba36c47d1b267775 2025-12-20T12:56:24.803239421

c5x4i4 c5x4i4 Uncharacterized protein 2017-04-20 false false 0.9 null doi_dedup___::d765dce3695a7f01ea744afbe22e12f0 https://dx.doi.org/10.1038/nature07723 https://dx.doi.org/10.1038/nature07723 The Sorghum bicolor genome and the diversification of grasses Penning, Bryan W. Gowik, Udo Springer Science and Business Media LLC Gingle, Alan R. 2009-01-29 https://boris.unibe.ch/136631/1/nature07723.pdf https://boris.unibe.ch/136631/ https://boris.unibe.ch/136631/ Zhang, Lifang 19189423 2009-01-01 https://dx.doi.org/10.5167/uzh-16962 https://dx.doi.org/10.5167/uzh-16962 2009-03-11 https://pubmed.ncbi.nlm.nih.gov/19189423 https://pubmed.ncbi.nlm.nih.gov/19189423 Ware, Doreen Ming, Ray Wang, Xiyin 10.48350/136631 Paterson, Andrew H. Rokhsar, Daniel S. Tang, Haibo Otillar, Robert P. 10.5167/uzh-16962 2009-01-01 https://www.zora.uzh.ch/id/eprint/16962/ https://doi.org/10.5167/uzh-16962 https://www.zora.uzh.ch/id/eprint/16962/ https://doi.org/10.5167/uzh-16962 Klein, Patricia Spannagl, Manuel 2024-01-01 https://dx.doi.org/10.48350/136631 https://dx.doi.org/10.48350/136631 2009-01-29 https://escholarship.org/uc/item/7vb6x245 https://escholarship.org/uc/item/7vb6x245 Lyons, Eric 2009-01-01 10.1038/nature07723 Maher, Christopher A. Hellsten, Uffe Salamov, Asaf. A. Bowers, John E. Wicker, Thomas CC BY NC SA https://www.nature.com/articles/nature07723.pdf https://www.nature.com/articles/nature07723.pdf Grigoriev, Igor V. Haberer, Georg Kresovich, Stephen Poliakov, Alexander Wang, Yu Mayer, Klaus F. X. Gundlach, Heidrun Marechania, Apurva Freeling, Michael hash, C. Thomas dubchak, Inna Peterson, Daniel G. Westhoff, Peter 2009-01-01 Grimwood, Jane Bruggmann, Remy Messing, Joachim Bharti, Arvind K. Schmutz, Jeremy Keller, Beat Chapman, Jarrod Martis, Mihaela Mitros, Therese McCann, Maureen C. 2009-01-01 CC BY NC SA https://doi.org/10.1038/nature07723 https://doi.org/10.1038/nature07723 Sorghum, an African grass related to sugar cane and maize, is grown for food, feed, fibre and fuel. We present an initial analysis of the approximately 730-megabase Sorghum bicolor (L.) Moench genome, placing approximately 98% of genes in their chromosomal context using whole-genome shotgun sequence validated by genetic, physical and syntenic information. Genetic recombination is largely confined to about one-third of the sorghum genome with gene order and density similar to those of rice. Retro ur-Rahman, Mehboob- Feltus, F. Alex Carpita, Nicholas C. 2017-04-20 c5x4i4 CC 0 http://www.uniprot.org/uniprot/C5X4I4

uniprot_____::7d45e3dea142d1d6131f8d8676f85e97 2025-12-20T12:56:49.541628839

s6fhk9 s6fhk9 Uncharacterized protein 2017-04-20 false false 0.9 null doi_dedup___::126119993d776bc3a3c9e6abb9f2078c 2014-03-07 https://pubmed.ncbi.nlm.nih.gov/23872564 https://pubmed.ncbi.nlm.nih.gov/23872564 Loubière, Pascal Bousquet, Muriel Coddeville, Michele Ritzenthaler, Paul https://dx.doi.org/10.1128/aem.01560-13 https://dx.doi.org/10.1128/aem.01560-13 ABSTRACT Lactococcus lactis subsp. lactis strain A12 was isolated from sourdough. Combined genomic, transcriptomic, and phenotypic analyses were performed to understand its survival capacity in the complex sourdough ecosystem and its role in the microbial community. The genome sequence comparison of strain A12 2013-01-01 https://hal.science/hal-01268295v1 https://doi.org/10.1128/aem.01560-13 https://hal.science/hal-01268295v1 https://doi.org/10.1128/aem.01560-13 Le Bourgeois, Pascal Fontagne-Faucher, Catherine 2013-01-01 https://doi.org/https://doi.org/10.1128/AEM.01560-13 https://doi.org/https://doi.org/10.1128/AEM.01560-13 2013-10-01 23872564 2013-10-01 ASM Journals Non-Commercial TDM https://doi.org/10.1128/aem.01560-13 https://doi.org/10.1128/aem.01560-13 10.1128/aem.01560-13 https://aem.asm.org/content/aem/79/19/5844.full.pdf https://aem.asm.org/content/aem/79/19/5844.full.pdf The Carbohydrate Metabolism Signature of Lactococcus lactis Strain A12 Reveals Its Sourdough Ecosystem Origin Passerini, Delphine PMC3811347 American Society for Microbiology Daveran-Mingot, Marie-Line 2013-01-01 https://hal.science/hal-01268295v1 https://doi.org/10.1128/aem.01560-13 https://hal.science/hal-01268295v1 https://doi.org/10.1128/aem.01560-13 2017-04-20 s6fhk9 CC 0 http://www.uniprot.org/uniprot/S6FHK9

uniprot_____::8fa22a454c7821568aedb49206c3891b 2025-12-20T12:56:25.006005578

b0fr04 b0fr04 Pol protein 2017-04-20 false false 0.9 null doi_dedup___::200113dbdfcbafa2f6304906b02c164f Mercedes, Muñoz Michael M, Thomson Anna, Vinogradova Leandro, Medrano María, Sierra 18160020 2007-12-01 Aleksey, Yakovlev Aza, Rakhmanova Lucía, Pérez-Alvarez Elena, Delgado The HIV-1 subtype A epidemic affecting injecting drug users (IDU) in former Soviet Union (FSU) countries started dramatically in Odessa, southern Ukraine, in 1995, and is caused by a variant of monophyletic origin, often designated IDU-A. We phylogenetically analyzed one near full-length genome and two partial sequences of three HIV-1 subtype A viruses collected in St. Petersburg, Russia, heterosexually transmitted in 1992-1994. The sequences branched basally to the IDU-A clade, together with ei Gerardo, Contreras Elena Vázquez, de Parga 2008-03-04 https://pubmed.ncbi.nlm.nih.gov/18160020 https://pubmed.ncbi.nlm.nih.gov/18160020 https://dx.doi.org/10.1089/aid.2007.0166 https://dx.doi.org/10.1089/aid.2007.0166 Gema, Casado Mary Ann Liebert Inc 2007-12-01 https://doi.org/10.1089/aid.2007.0166 https://doi.org/10.1089/aid.2007.0166 Rocío, Carmona New Insights into the Origin of the HIV Type 1 Subtype A Epidemic in Former Soviet Union's Countries Derived from Sequence Analyses of Preepidemically Transmitted Viruses Rafael, Nájera Saladin, Osmanov 10.1089/aid.2007.0166 Yolanda, Vega 2017-04-20 b0fr04 CC 0 http://www.uniprot.org/uniprot/B0FR04

uniprot_____::901002464d80889023146852b7783fd6 2025-12-20T12:56:49.610890310

r9xes9 r9xes9 AaceriADR409Wp 2017-04-20 false false 0.9 null doi_dedup___::e90fdd39b38146e5e92b1eff5c6fe4f8 PMC3737163 CC BY NC http://www.g3journal.org/content/3/8/1225.full.pdf http://www.g3journal.org/content/3/8/1225.full.pdf Philippsen, Peter 2013-08-01 OUP Standard Publication Reuse https://doi.org/10.1534/g3.112.002881 https://doi.org/10.1534/g3.112.002881 2013-08-01 CC BY http://dx.doi.org/10.1534/g3.112.002881 http://dx.doi.org/10.1534/g3.112.002881 23749448 Voegeli, Sylvia Kuo, Sidney 2013-08-01 Oxford University Press (OUP) Abstract The filamentous fungus Ashbya gossypii is a cotton pathogen transmitted by insects. It is readily grown and manipulated in the laboratory and is commercially exploited as a natural overproducer of vitamin B2. Our previous genome analysis of A. gossypii isolate ATCC10895, collected in Trinidad nearly 100 years ago, revealed extensive synteny with the Saccharomyces cerevisiae genome, leading us to use it as a model organism to understand the Genomes of <i>Ashbya</i> Fungi Isolated from Insects Reveal Four Mating-Type Loci, Numerous Translocations, Lack of Transposons, and Distinct Gene Duplications Dietrich, Fred S. 2014-03-17 https://pubmed.ncbi.nlm.nih.gov/23749448 https://pubmed.ncbi.nlm.nih.gov/23749448 10.1534/g3.112.002881 https://dx.doi.org/10.1534/g3.112.002881 https://dx.doi.org/10.1534/g3.112.002881 2017-04-20 r9xes9 CC 0 http://www.uniprot.org/uniprot/R9XES9